Confirmed, audio and video timestamps are completely off :
First segment Video starts PTS = 844378
First segment Audio start PTS = 0 (9.381978 sec)
[tmp]$ ffmpeg -i video/segment_0.ts
ffmpeg version 2.6.3- http://johnvansickle.com/ffmpeg/ Copyright (c) 2000-2015 the FFmpeg developers
Duration: 00:00:04.00, start: 9.381978, bitrate: 856 kb/s
[tmp]$ ffmpeg -i audio/segment_0.ts
ffmpeg version 2.6.3- http://johnvansickle.com/ffmpeg/ Copyright (c) 2000-2015 the FFmpeg developers
Duration: 00:00:04.01, start: 0.000000, bitrate: 216 kb/s
audio and video data does not match, so we can not play back properly, audio and video segments MUST be in sync when audio is in a separate stream
Correction :
First segment Video starts PTS = 844378 (9.381978 sec)
First segment Audio start PTS = 0 (0 sec)